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Botany Photo of the Day
In science, beauty. In beauty, science. Daily.

Arabidopsis thaliana

Arabidopsis thaliana

Ruth has assembled the following series, running all of this week. Ruth writes:

It's Celebrate Research Week here at UBC! Free seminars & lectures, open houses, and symposia are held throughout the Lower Mainland and the Okanagan to inspire and inform the public. On Botany Photo of the Day, we're joining in with a series on UBC research (and researchers!) as a way to show our appreciation for all the hard-working research folk from the underground laboratory world -- the ones only seen late at night traveling the transit system to get a few hours of sleep at home before heading back to the lab in the early morning. Thank you!

Arabidopsis thaliana is a well-researched species within the Brassicaceae. Its genome is especially tiny, at only 125 Mb (million base pairs) -- all of which are sequenced. Many of the researchers in the UBC Department of Botany are working with this species and examining it from many different approaches.

George Haughn of the UBC Botany department writes a few words about his research:

"The seed coat is a specialized tissue that develops following fertilization to provide a protective layer for the embryo. In some species, including Arabidopsis thaliana, the seed coat epidermal cells synthesize and secrete large quantities of polysaccharide mucilage between the cell membrane and primary cell wall."

Ruth interjects: Mucilage is a polymer of sorts found in plants. It is thought to aid in water storage and seed germination. Cacti and succulents tend to have a great deal of mucilage. If you have ever treated a sunburn with a home remedy you can just imagine that goo from inside an aloe.

George Haughn continues: "Upon exposure of the mature seed to water, the mucilage swells, ruptures the primary cell wall and envelops the seed to form a protective layer. This mucilage is similar in composition to a major component of the plant and secondary cell wall (pectin) that is important for cementing of plant cells together. Because mucilage is made in large quantities at a specific time in development, it can easily be isolated. It is not required for viability under laboratory conditions."

"The Arabidopsis seed coat epidermal cells represent a useful model system for using genetics to study complex polysaccharide biosynthesis and secretion. We use mutants unable to produce normal mucilage as an approach to identifying and cloning genes that are required for these processes with the intent to better understand cell wall structure and function."

19 Comments

Knox commented:

Thanks Ruth; fascinating but, what is Arabidopsis thaliana? What size is it? Where is it found? What is the rest of the story? I'm not criticizing. Just curious.

EJ commented:

@Knox Why not check it out at Wikipedia?

thad davis commented:

Very interesting photo and description, but what exactly are we looking at?

ruth commented:

You're right Thad, I did not describe the photo. This is an Arabidopsis thaliana seed, treated with a dye that turn the seed coat mucilage red. Thanks for your interest and response! -Ruth

Annie Morgan commented:

Wikipedia does, indeed, have an excellent little description of the plant - though for the purposes of this series, I rather think the identity of the plant isn't the point, or necessary. I look forward to tomorrow's article.

SoapySophia commented:

Almost reminds me of a heart, as in the muscle not the shape. Just amazing all the little things we'd never see if it weren't for the microscope!

sean commented:

i love it. A. thaliana, I studied this one's DNA in school. this must be the fruiting body... I like the plant body-part challenge.

Mohammed Tohaa commented:

Arabidopsis thaliana- its common vegetable found in south east Asia. very popular in INDIAN subcontinent
common name is Bhindi(native to India).Its also known as ladies finger, its of green colour and elongated ,it varies in sizes from 3-7 cm.its a bit sticky coz of some secretions.
anybody lookin for any info on arabidopsis thaliana can just google i am sure u`ll get lot of info .


Allan Hall commented:

Sorry to contradict, Mohammed - but bhindi/ladies finger (known in other continents as okra) is a quite different plant - a member of the Malvaceae (http://en.wikipedia.org/wiki/Okra). Must be the mucilage which its pods contain that's causing the confusion! A. thaliana (thale cress) is a tiny plant that I doubt anyone would bother to eat but its tiny size, short life-cycle and small genome make it beloved of geneticists... in a sense it's the botanical equivalent of the fruit fly!

Susanne commented:

Oh yeah, arabidopsis. It is a very small plant and was recently described during a staff meeting as a weed, albeit a clean one. The entire leaf rosette (at least in the strains we grow) is perhaps 2 inches across. I can only agree with Allan, you would not bother eating this!
Susanne

SK commented:

@EJ--Who put you in charge? Why not stay out of it?

Sue Vargas commented:

Kudos to the people who work everyday to help mankind.

Adri commented:

Well, I do genetic research on Magnolia virginiana because I said I only wanted to work with plants with pretty flowers! And why would I want to use a "weed" that I would spray with roundup in my garden???? BUT---Arabidopsis has become invaluable in my research to study the functions of flowering genes by way of complemetation studies. Dang! I so only wanted to look at pretty flowers! Maybe post an arabidopsis flower so others know what they look like!

EJ commented:

We get so much interesting information and such great photos from these folks. A little work (googling a name) if you really are interested in more isn't asking too much, is it?

SK commented:

Sorry, EJ, your first post seemed a little snarky to me. I withdraw my remark.

Karen Vaughan commented:

Arabidopsis thaliana is thale cress and the seeds are good for constipation due to the mucilage.

Ash commented:

Hi Ruth, great picture!

I'm interested in knowing more about the constituents of the cell walls in arabidopsis seed. Not just the seed coat, but the endosperm as well. Any advice or authors/labs I should look up?

nithin commented:

i'm intrested in knowing the anti microbial protien sequence of arabidopsis

MP commented:

Can anybody pls say me the Indian common name of Arabidopsis thaliana?

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